IL_6Q98_209

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UAUGAAGAAG*UGUAAAGUA

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|2|U|407
6Q98|1|2|A|408
6Q98|1|2|U|409
6Q98|1|2|G|410
6Q98|1|2|A|411
6Q98|1|2|A|412
6Q98|1|2|G|413
6Q98|1|2|A|414
6Q98|1|2|A|415
6Q98|1|2|G|416
*
6Q98|1|2|U|427
6Q98|1|2|G|428
6Q98|1|2|U|429
6Q98|1|2|A|430
6Q98|1|2|A|431
6Q98|1|2|A|432
6Q98|1|2|G|433
6Q98|1|2|U|434
6Q98|1|2|A|435

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4