IL_6Q98_215
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 6Q98|1|2|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q98_215 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.2615
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6Q98|1|2|U|1052
6Q98|1|2|G|1053
6Q98|1|2|C|1054
6Q98|1|2|A|1055
6Q98|1|2|U|1056
*
6Q98|1|2|A|1204
6Q98|1|2|U|1205
6Q98|1|2|G|1206
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain h
- 30S ribosomal protein S3
- Chain o
- 30S ribosomal protein S10
- Chain s
- 30S ribosomal protein S14
Coloring options: