IL_6Q98_216

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGUUGCCAGC*GGGAACUCA

Length

19 nucleotides

Bulged bases

6Q98|1|2|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q98|1|2|U|1123
6Q98|1|2|G|1124
6Q98|1|2|U|1125
6Q98|1|2|U|1126
6Q98|1|2|G|1127
6Q98|1|2|C|1128
6Q98|1|2|C|1129
6Q98|1|2|A|1130
6Q98|1|2|G|1131
6Q98|1|2|C|1132
*
6Q98|1|2|G|1142
6Q98|1|2|G|1143
6Q98|1|2|G|1144
6Q98|1|2|A|1145
6Q98|1|2|A|1146
6Q98|1|2|C|1147
6Q98|1|2|U|1148
6Q98|1|2|C|1149
6Q98|1|2|A|1150

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S9

Chain o

30S ribosomal protein S10