IL_6Q98_231

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UAUAG*UGGGUA

Length

11 nucleotides

Bulged bases

6Q98|1|1|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_231 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3853

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6Q98|1|1|U|2079
6Q98|1|1|A|2080
6Q98|1|1|U|2081
6Q98|1|1|A|2082
6Q98|1|1|G|2083
*
6Q98|1|1|U|2236
6Q98|1|1|G|2237
6Q98|1|1|G|2238
6Q98|1|1|G|2239
6Q98|1|1|U|2240
6Q98|1|1|A|2241

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain X

50S ribosomal protein L28