IL_6Q9A_016

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6Q9A|1|1|G|801, 6Q9A|1|1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q9A_016 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1199

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6Q9A|1|1|G|674
6Q9A|1|1|A|675
6Q9A|1|1|A|676
6Q9A|1|1|A|677
6Q9A|1|1|C|678
*
6Q9A|1|1|G|799
6Q9A|1|1|A|800
6Q9A|1|1|G|801
6Q9A|1|1|A|802
6Q9A|1|1|U|803
6Q9A|1|1|A|804
6Q9A|1|1|G|805
6Q9A|1|1|C|806

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain L

50S ribosomal protein L15