IL_6Q9A_108

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q9A_108 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.1282

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6Q9A|1|1|U|2847
6Q9A|1|1|G|2848
6Q9A|1|1|U|2849
6Q9A|1|1|A|2850
6Q9A|1|1|A|2851
6Q9A|1|1|G|2852
*
6Q9A|1|1|U|2865
6Q9A|1|1|U|2866
6Q9A|1|1|G|2867
6Q9A|1|1|A|2868
6Q9A|1|1|G|2869

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19