IL_6Q9A_134

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6Q9A|1|2|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q9A_134 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1376

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6Q9A|1|2|C|569
6Q9A|1|2|G|570
6Q9A|1|2|U|571
6Q9A|1|2|A|572
6Q9A|1|2|A|573
6Q9A|1|2|A|574
6Q9A|1|2|G|575
*
6Q9A|1|2|C|880
6Q9A|1|2|G|881

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S8

Chain q

30S ribosomal protein S12

Chain v

30S ribosomal protein S17