IL_6Q9A_152

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCA*UGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q9A_152 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3261

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6Q9A|1|2|C|998
6Q9A|1|2|C|999
6Q9A|1|2|A|1000
*
6Q9A|1|2|U|1040
6Q9A|1|2|G|1041
6Q9A|1|2|A|1042
6Q9A|1|2|G|1043

Current chains

Chain 2

16S ribosomal RNA

Nearby chains