IL_6Q9A_192

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAUUGAUG*UUGAUCGAAGC

Length

22 nucleotides

Bulged bases

6Q9A|1|1|U|1852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q9A_192 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.5913

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6Q9A|1|1|G|1850
6Q9A|1|1|U|1851
6Q9A|1|1|U|1852
6Q9A|1|1|A|1853
6Q9A|1|1|A|1854
6Q9A|1|1|U|1855
6Q9A|1|1|U|1856
6Q9A|1|1|G|1857
6Q9A|1|1|A|1858
6Q9A|1|1|U|1859
6Q9A|1|1|G|1860
*
6Q9A|1|1|U|1882
6Q9A|1|1|U|1883
6Q9A|1|1|G|1884
6Q9A|1|1|A|1885
6Q9A|1|1|U|1886
6Q9A|1|1|C|1887
6Q9A|1|1|G|1888
6Q9A|1|1|A|1889
6Q9A|1|1|A|1890
6Q9A|1|1|G|1891
6Q9A|1|1|C|1892

Current chains

Chain 1

23S ribosomal RNA

Nearby chains