IL_6Q9A_215

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUA*UGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q9A_215 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.3378

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

6Q9A|1|4|G|252
6Q9A|1|4|U|253
6Q9A|1|4|U|254
6Q9A|1|4|A|255
*
6Q9A|1|4|U|276
6Q9A|1|4|G|277
6Q9A|1|4|G|278
6Q9A|1|4|C|279

Current chains

Chain 4

tmRNA

Nearby chains