IL_6QDW_046

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

6QDW|1|b|A|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QDW_046 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.2902

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

6QDW|1|b|G|1204
6QDW|1|b|U|1205
6QDW|1|b|A|1206
6QDW|1|b|A|1207
6QDW|1|b|G|1208
*
6QDW|1|b|U|1242
6QDW|1|b|A|1243
6QDW|1|b|U|1244
6QDW|1|b|C|1245

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain l

50S ribosomal protein L15