IL_6QDW_067

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6QDW|1|b|G|1701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QDW_067 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.068

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6QDW|1|b|C|1688
6QDW|1|b|G|1689
6QDW|1|b|U|1690
6QDW|1|b|A|1691
6QDW|1|b|A|1692
6QDW|1|b|C|1693
*
6QDW|1|b|G|1698
6QDW|1|b|G|1699
6QDW|1|b|A|1700
6QDW|1|b|G|1701
6QDW|1|b|A|1702
6QDW|1|b|A|1703
6QDW|1|b|G|1704

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2