IL_6QDW_068

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

6QDW|1|b|U|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QDW_068 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1026

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6QDW|1|b|U|1714
6QDW|1|b|A|1715
6QDW|1|b|U|1716
6QDW|1|b|G|1717
6QDW|1|b|U|1718
6QDW|1|b|A|1719
6QDW|1|b|G|1720
*
6QDW|1|b|U|1744
6QDW|1|b|G|1745
6QDW|1|b|A|1746
6QDW|1|b|A|1747
6QDW|1|b|A|1748

Current chains

Chain b

23S rRNA

Nearby chains