IL_6QDW_082
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- AA*UACU
- Length
- 6 nucleotides
- Bulged bases
- 6QDW|1|b|A|2443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QDW_082 not in the Motif Atlas
- Homologous match to IL_5J7L_324
- Geometric discrepancy: 0.1038
- The information below is about IL_5J7L_324
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_51454.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 45
Unit IDs
6QDW|1|b|A|2074
6QDW|1|b|A|2075
*
6QDW|1|b|U|2442
6QDW|1|b|A|2443
6QDW|1|b|C|2444
6QDW|1|b|U|2445
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L2
- Chain v
- Transfer RNA; tRNA
- Chain z
- Gamma-crystallin B
Coloring options: