3D structure

PDB id
6QDW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
AA*UACU
Length
6 nucleotides
Bulged bases
6QDW|1|b|A|2443
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QDW_082 not in the Motif Atlas
Homologous match to IL_5J7L_324
Geometric discrepancy: 0.1038
The information below is about IL_5J7L_324
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
45

Unit IDs

6QDW|1|b|A|2074
6QDW|1|b|A|2075
*
6QDW|1|b|U|2442
6QDW|1|b|A|2443
6QDW|1|b|C|2444
6QDW|1|b|U|2445

Current chains

Chain b
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L2
Chain v
Transfer RNA; tRNA
Chain z
Gamma-crystallin B

Coloring options:


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