IL_6QDW_087

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QDW_087 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.0744

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6QDW|1|b|C|2354
6QDW|1|b|G|2355
6QDW|1|b|A|2356
6QDW|1|b|G|2357
*
6QDW|1|b|C|2368
6QDW|1|b|G|2369
6QDW|1|b|A|2370
6QDW|1|b|G|2371

Current chains

Chain b

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain o

50S ribosomal protein L18

Chain y

50S ribosomal protein L27