IL_6QDW_088

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

6QDW|1|b|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QDW|1|b|U|2405
6QDW|1|b|U|2406
6QDW|1|b|C|2407
*
6QDW|1|b|G|2418
6QDW|1|b|G|2419

Current chains

Chain b

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L33

Chain 7

50S ribosomal protein L35

Chain l

50S ribosomal protein L15