IL_6QDW_108

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QDW_108 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.1226

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6QDW|1|b|U|2851
6QDW|1|b|G|2852
6QDW|1|b|U|2853
6QDW|1|b|A|2854
6QDW|1|b|A|2855
6QDW|1|b|G|2856
*
6QDW|1|b|U|2869
6QDW|1|b|U|2870
6QDW|1|b|G|2871
6QDW|1|b|A|2872
6QDW|1|b|G|2873

Current chains

Chain b

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19