IL_6QIK_022

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QIK_022 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.0908

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6QIK|1|A|G|725
6QIK|1|A|G|726
6QIK|1|A|G|727
6QIK|1|A|G|728
*
6QIK|1|A|U|741
6QIK|1|A|G|742
6QIK|1|A|C|743
6QIK|1|A|A|744
6QIK|1|A|C|745

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L18-A

Chain a

60S ribosomal protein L29