IL_6QIK_060

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QIK_060 not in the Motif Atlas

Homologous match to IL_5TBW_064

Geometric discrepancy: 0.1297

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6QIK|1|A|G|1618
6QIK|1|A|A|1619
6QIK|1|A|U|1620
6QIK|1|A|A|1621
*
6QIK|1|A|U|1824
6QIK|1|A|G|1825
6QIK|1|A|C|1826

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain j

60S ribosomal protein L38

Chain y

5.8S ribosomal RNA; 5.8S rRNA