IL_6QIK_082

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QIK_082 not in the Motif Atlas

Geometric match to IL_4PDB_001

Geometric discrepancy: 0.2815

The information below is about IL_4PDB_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

6QIK|1|A|G|2206
6QIK|1|A|A|2207
6QIK|1|A|A|2208
6QIK|1|A|U|2209
6QIK|1|A|G|2210
*
6QIK|1|A|C|2235
6QIK|1|A|G|2236
6QIK|1|A|C|2237

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L2-A

Chain w

60S ribosomal export protein NMD3