IL_6QIK_093

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAG*CGCCAGUGAAAUAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QIK_093 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.3884

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

6QIK|1|A|G|2465
6QIK|1|A|G|2466
6QIK|1|A|G|2467
6QIK|1|A|A|2468
6QIK|1|A|G|2469
*
6QIK|1|A|C|2476
6QIK|1|A|G|2477
6QIK|1|A|C|2478
6QIK|1|A|C|2479
6QIK|1|A|A|2480
6QIK|1|A|G|2481
6QIK|1|A|U|2482
6QIK|1|A|G|2483
6QIK|1|A|A|2484
6QIK|1|A|A|2485
6QIK|1|A|A|2486
6QIK|1|A|U|2487
6QIK|1|A|A|2488
6QIK|1|A|C|2489

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain p

uL1