IL_6QIK_094
3D structure
- PDB id
- 6QIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 6QIK|1|A|G|2522, 6QIK|1|A|G|2585, 6QIK|1|A|G|2586
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QIK_094 not in the Motif Atlas
- Homologous match to IL_5TBW_096
- Geometric discrepancy: 0.1045
- The information below is about IL_5TBW_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
6QIK|1|A|A|2520
6QIK|1|A|U|2521
6QIK|1|A|G|2522
6QIK|1|A|A|2523
6QIK|1|A|A|2524
6QIK|1|A|G|2525
6QIK|1|A|C|2526
*
6QIK|1|A|G|2584
6QIK|1|A|G|2585
6QIK|1|A|G|2586
6QIK|1|A|U|2587
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L2-A
- Chain H
- 60S ribosomal protein L8-A
- Chain W
- 60S ribosomal protein L25
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: