IL_6QIK_104

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QIK_104 not in the Motif Atlas

Homologous match to IL_5TBW_106

Geometric discrepancy: 0.371

The information below is about IL_5TBW_106

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6QIK|1|A|U|2835
6QIK|1|A|C|2836
6QIK|1|A|A|2837
6QIK|1|A|A|2838
6QIK|1|A|G|2839
*
6QIK|1|A|C|2849
6QIK|1|A|G|2850
6QIK|1|A|A|2851
6QIK|1|A|C|2852
6QIK|1|A|A|2853

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain t

Ubiquitin-60S ribosomal protein L40