IL_6QIK_109

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAC*GUAAG

Length

8 nucleotides

Bulged bases

6QIK|1|A|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QIK_109 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3852

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

6QIK|1|A|U|2891
6QIK|1|A|A|2892
6QIK|1|A|C|2893
*
6QIK|1|A|G|2908
6QIK|1|A|U|2909
6QIK|1|A|A|2910
6QIK|1|A|A|2911
6QIK|1|A|G|2912

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L9-A

Chain J

60S ribosomal protein L16-B

Chain t

Ubiquitin-60S ribosomal protein L40