IL_6QIK_116

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

6QIK|1|A|U|3056, 6QIK|1|A|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QIK_116 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.1188

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6QIK|1|A|U|3054
6QIK|1|A|U|3055
6QIK|1|A|U|3056
6QIK|1|A|U|3057
6QIK|1|A|U|3058
6QIK|1|A|G|3059
*
6QIK|1|A|C|3084
6QIK|1|A|G|3085
6QIK|1|A|A|3086
6QIK|1|A|A|3087
6QIK|1|A|G|3088

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A

Chain v

60S ribosomal protein L24-A