3D structure

PDB id
6QIK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
ACCGAGUAG*CGAAACU
Length
16 nucleotides
Bulged bases
6QIK|1|x|C|73
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QIK_137 not in the Motif Atlas
Homologous match to IL_5TBW_377
Geometric discrepancy: 0.1505
The information below is about IL_5TBW_377
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6QIK|1|x|A|72
6QIK|1|x|C|73
6QIK|1|x|C|74
6QIK|1|x|G|75
6QIK|1|x|A|76
6QIK|1|x|G|77
6QIK|1|x|U|78
6QIK|1|x|A|79
6QIK|1|x|G|80
*
6QIK|1|x|C|100
6QIK|1|x|G|101
6QIK|1|x|A|102
6QIK|1|x|A|103
6QIK|1|x|A|104
6QIK|1|x|C|105
6QIK|1|x|U|106

Current chains

Chain x
5S ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain S
60S ribosomal protein L20-A
Chain T
60S ribosomal protein L21-A
Chain b
60S ribosomal protein L7-A

Coloring options:


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