IL_6QIK_139
3D structure
- PDB id
- 6QIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QIK_139 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0765
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
6QIK|1|y|A|44
6QIK|1|y|C|45
6QIK|1|y|G|46
6QIK|1|y|C|47
6QIK|1|y|A|48
6QIK|1|y|G|49
6QIK|1|y|C|50
6QIK|1|y|G|51
6QIK|1|y|A|52
6QIK|1|y|A|53
6QIK|1|y|A|54
6QIK|1|y|U|55
6QIK|1|y|G|56
6QIK|1|y|C|57
6QIK|1|y|G|58
6QIK|1|y|A|59
6QIK|1|y|U|60
6QIK|1|y|A|61
6QIK|1|y|C|62
6QIK|1|y|G|63
6QIK|1|y|U|64
*
6QIK|1|y|A|96
6QIK|1|y|A|97
6QIK|1|y|U|98
6QIK|1|y|C|99
6QIK|1|y|U|100
Current chains
- Chain y
- 5.8S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain W
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L39
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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