IL_6QIK_151

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

6QIK|1|A|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QIK_151 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.4588

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6QIK|1|A|G|2828
6QIK|1|A|U|2829
6QIK|1|A|G|2830
*
6QIK|1|A|U|2858
6QIK|1|A|U|2859
6QIK|1|A|U|2860
6QIK|1|A|U|2861
6QIK|1|A|U|2862

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain w

60S ribosomal export protein NMD3