IL_6QNQ_019

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_019 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1719

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6QNQ|1|13|G|450
6QNQ|1|13|A|451
6QNQ|1|13|A|452
6QNQ|1|13|A|453
6QNQ|1|13|C|454
6QNQ|1|13|C|455
*
6QNQ|1|13|G|477
6QNQ|1|13|A|478
6QNQ|1|13|C|479
6QNQ|1|13|U|480
6QNQ|1|13|G|481
6QNQ|1|13|A|482
6QNQ|1|13|C|483

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9

Chain 7I

30S ribosomal protein S16