3D structure

PDB id
6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome initiation complex (IC) with experimentally assigned potassium ions
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
GAAACC*GACUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QNQ_019 not in the Motif Atlas
Geometric match to IL_4LFB_019
Geometric discrepancy: 0.1719
The information below is about IL_4LFB_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31561.1
Basepair signature
cWW-L-R-tWH-tWH-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

6QNQ|1|13|G|450
6QNQ|1|13|A|451
6QNQ|1|13|A|452
6QNQ|1|13|A|453
6QNQ|1|13|C|454
6QNQ|1|13|C|455
*
6QNQ|1|13|G|477
6QNQ|1|13|A|478
6QNQ|1|13|C|479
6QNQ|1|13|U|480
6QNQ|1|13|G|481
6QNQ|1|13|A|482
6QNQ|1|13|C|483

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 69
50S ribosomal protein L9
Chain 7I
30S ribosomal protein S16

Coloring options:


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