IL_6QNQ_069

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

6QNQ|1|14|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_069 not in the Motif Atlas

Homologous match to IL_7RQB_012

Geometric discrepancy: 0.2222

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6QNQ|1|14|C|288
6QNQ|1|14|A|289
6QNQ|1|14|G|290
*
6QNQ|1|14|U|350
6QNQ|1|14|G|351
6QNQ|1|14|G|352
6QNQ|1|14|G|353

Current chains

Chain 14

23S ribosomal RNA

Nearby chains