IL_6QNQ_106

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_106 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.1938

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6QNQ|1|14|U|1357
6QNQ|1|14|G|1358
6QNQ|1|14|A|1359
6QNQ|1|14|A|1360
6QNQ|1|14|G|1361
*
6QNQ|1|14|C|1370
6QNQ|1|14|G|1371
6QNQ|1|14|U|1372
6QNQ|1|14|A|1373
6QNQ|1|14|G|1374

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain F5

50S ribosomal protein L28

Chain L5

50S ribosomal protein L34