IL_6QNQ_139

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_139 not in the Motif Atlas

Homologous match to IL_4WF9_087

Geometric discrepancy: 0.1191

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6QNQ|1|14|C|2350
6QNQ|1|14|G|2351
6QNQ|1|14|A|2352
6QNQ|1|14|G|2353
*
6QNQ|1|14|C|2364
6QNQ|1|14|G|2365
6QNQ|1|14|A|2366
6QNQ|1|14|G|2367

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 65

50S ribosomal protein L18

Chain E5

50S ribosomal protein L27

Chain M5

50S ribosomal protein L35