3D structure

PDB id
6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome initiation complex (IC) with experimentally assigned potassium ions
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
CCUCU*AUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QNQ_153 not in the Motif Atlas
Homologous match to IL_7RQB_104
Geometric discrepancy: 0.1285
The information below is about IL_7RQB_104
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.6
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
14

Unit IDs

6QNQ|1|14|C|2680
6QNQ|1|14|C|2681
6QNQ|1|14|U|2682
6QNQ|1|14|C|2683
6QNQ|1|14|U|2684
*
6QNQ|1|14|A|2725
6QNQ|1|14|U|2726
6QNQ|1|14|G|2727

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 25
50S ribosomal protein L14
Chain 29
50S ribosomal protein L3
Chain 55
50S ribosomal protein L17
Chain 75
50S ribosomal protein L19

Coloring options:


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