IL_6QNQ_215

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

6QNQ|1|1G|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_215 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2655

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6QNQ|1|1G|C|1399
6QNQ|1|1G|5MC|1400
6QNQ|1|1G|G|1401
*
6QNQ|1|1G|C|1501
6QNQ|1|1G|A|1502
6QNQ|1|1G|A|1503
6QNQ|1|1G|G|1504

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 2L

Transfer RNA; tRNA

Chain 4L

mRNA