IL_6QNQ_233

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

6QNQ|1|1H|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_233 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1266

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6QNQ|1|1H|C|280
6QNQ|1|1H|G|281
6QNQ|1|1H|A|282
6QNQ|1|1H|A|283
6QNQ|1|1H|U|284
*
6QNQ|1|1H|A|357
6QNQ|1|1H|U|358
6QNQ|1|1H|A|359
6QNQ|1|1H|G|360

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains