IL_6QNQ_279

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

6QNQ|1|1H|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_279 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.3539

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6QNQ|1|1H|U|1482
6QNQ|1|1H|G|1483
*
6QNQ|1|1H|C|1506
6QNQ|1|1H|A|1507
6QNQ|1|1H|A|1508
6QNQ|1|1H|C|1509
6QNQ|1|1H|A|1510
6QNQ|1|1H|A|1511
6QNQ|1|1H|G|1512

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains