IL_6QNQ_305

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_305 not in the Motif Atlas

Homologous match to IL_7RQB_087

Geometric discrepancy: 0.5254

The information below is about IL_7RQB_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QNQ|1|1H|C|2129
6QNQ|1|1H|U|2130
6QNQ|1|1H|G|2131
6QNQ|1|1H|U|2132
6QNQ|1|1H|G|2133
6QNQ|1|1H|A|2134
6QNQ|1|1H|A|2135
6QNQ|1|1H|C|2136
*
6QNQ|1|1H|G|2155
6QNQ|1|1H|G|2156
6QNQ|1|1H|G|2157
6QNQ|1|1H|A|2158
6QNQ|1|1H|G|2159

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 71

50S ribosomal protein L1