IL_6QNQ_346

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGCC*GGUAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_346 not in the Motif Atlas

Geometric match to IL_8C3A_111

Geometric discrepancy: 0.3272

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6QNQ|1|14|G|273
6QNQ|1|14|G|273|||A
6QNQ|1|14|C|273|||B
6QNQ|1|14|C|273|||C
*
6QNQ|1|14|G|363|||C
6QNQ|1|14|G|363|||D
6QNQ|1|14|U|363|||E
6QNQ|1|14|A|363|||F
6QNQ|1|14|C|364

Current chains

Chain 14

23S ribosomal RNA

Nearby chains