IL_6QNQ_349

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

6QNQ|1|14|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_349 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1904

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6QNQ|1|14|C|844
6QNQ|1|14|G|845
6QNQ|1|14|C|846
6QNQ|1|14|U|847
6QNQ|1|14|G|848
6QNQ|1|14|A|849
6QNQ|1|14|C|850
*
6QNQ|1|14|G|928
6QNQ|1|14|G|929
6QNQ|1|14|U|930
6QNQ|1|14|G|931
6QNQ|1|14|G|932
6QNQ|1|14|A|933
6QNQ|1|14|G|934

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain H5

50S ribosomal protein L30