IL_6QNQ_355

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAGAAG*UGGUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_355 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3564

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6QNQ|1|14|C|1468
6QNQ|1|14|A|1469
6QNQ|1|14|G|1470
6QNQ|1|14|A|1471
6QNQ|1|14|A|1472
6QNQ|1|14|G|1473
*
6QNQ|1|14|U|1520
6QNQ|1|14|G|1521
6QNQ|1|14|G|1522
6QNQ|1|14|U|1523
6QNQ|1|14|G|1524

Current chains

Chain 14

23S ribosomal RNA

Nearby chains