IL_6QNQ_362

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_362 not in the Motif Atlas

Homologous match to IL_6CZR_361

Geometric discrepancy: 0.1832

The information below is about IL_6CZR_361

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56539.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

4

Unit IDs

6QNQ|1|1G|G|597
6QNQ|1|1G|U|598
6QNQ|1|1G|C|599
*
6QNQ|1|1G|G|639
6QNQ|1|1G|A|640
6QNQ|1|1G|U|641
6QNQ|1|1G|A|642
6QNQ|1|1G|C|643

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 72

30S ribosomal protein S8

Chain 8A

30S ribosomal protein S17