3D structure

PDB id
6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome initiation complex (IC) with experimentally assigned potassium ions
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
UACAAAG*CAAAAAG
Length
14 nucleotides
Bulged bases
6QNQ|1|1G|A|1286
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QNQ_369 not in the Motif Atlas
Homologous match to IL_4LFB_051
Geometric discrepancy: 0.2099
The information below is about IL_4LFB_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

6QNQ|1|1G|U|1247
6QNQ|1|1G|A|1248
6QNQ|1|1G|C|1249
6QNQ|1|1G|A|1250
6QNQ|1|1G|A|1251
6QNQ|1|1G|A|1252
6QNQ|1|1G|G|1253
*
6QNQ|1|1G|C|1284
6QNQ|1|1G|A|1285
6QNQ|1|1G|A|1286
6QNQ|1|1G|A|1287
6QNQ|1|1G|A|1288
6QNQ|1|1G|A|1289
6QNQ|1|1G|G|1290

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 1A
30S ribosomal protein S10
Chain 1B
30S ribosomal protein Thx
Chain 5A
30S ribosomal protein S14 type Z
Chain 62
30S ribosomal protein S7
Chain 82
30S ribosomal protein S9

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3967 s