IL_6QNR_079

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6QNR|1|14|G|801, 6QNR|1|14|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_079 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.0941

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

6QNR|1|14|G|674
6QNR|1|14|A|675
6QNR|1|14|A|676
6QNR|1|14|A|677
6QNR|1|14|C|678
*
6QNR|1|14|G|799
6QNR|1|14|A|800
6QNR|1|14|G|801
6QNR|1|14|A|802
6QNR|1|14|U|803
6QNR|1|14|A|804
6QNR|1|14|G|805
6QNR|1|14|C|806

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain 39

50S ribosomal protein L4