IL_6QNR_132

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAGG*CCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_132 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.3537

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6QNR|1|14|G|1856
6QNR|1|14|G|1857
6QNR|1|14|G|1858
6QNR|1|14|A|1859
6QNR|1|14|G|1860
6QNR|1|14|G|1861
*
6QNR|1|14|C|1881
6QNR|1|14|C|1882
6QNR|1|14|G|1883
6QNR|1|14|A|1884
6QNR|1|14|A|1885
6QNR|1|14|C|1886

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 3L

Transfer RNA; tRNA

Chain 79

50S ribosomal protein L1

Chain F5

50S ribosomal protein L28