IL_6QNR_239

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_239 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0533

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6QNR|1|1H|U|229
6QNR|1|1H|G|230
6QNR|1|1H|A|231
6QNR|1|1H|G|232
6QNR|1|1H|U|233
6QNR|1|1H|A|234
6QNR|1|1H|G|235
*
6QNR|1|1H|C|243
6QNR|1|1H|G|244
6QNR|1|1H|A|245
6QNR|1|1H|A|246
6QNR|1|1H|A|247
6QNR|1|1H|G|248

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 78

50S ribosomal protein L15

Chain Q8

50S ribosomal protein L35