IL_6QNR_268

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

6QNR|1|1H|U|1188, 6QNR|1|1H|A|1190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_268 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.0979

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

6QNR|1|1H|C|1065
6QNR|1|1H|U|1066
6QNR|1|1H|A|1067
6QNR|1|1H|A|1068
6QNR|1|1H|G|1069
6QNR|1|1H|U|1070
6QNR|1|1H|G|1071
*
6QNR|1|1H|C|1186
6QNR|1|1H|U|1187
6QNR|1|1H|U|1188
6QNR|1|1H|A|1189
6QNR|1|1H|A|1190
6QNR|1|1H|G|1191

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 58

50S ribosomal protein L13