IL_6QNR_289

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_289 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1096

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6QNR|1|1H|A|1517
6QNR|1|1H|G|1518
6QNR|1|1H|A|1519
6QNR|1|1H|A|1520
6QNR|1|1H|G|1521
*
6QNR|1|1H|U|1567
6QNR|1|1H|G|1568
6QNR|1|1H|G|1569
6QNR|1|1H|U|1570

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains