IL_6QNR_297

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6QNR|1|1H|G|1747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_297 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1062

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6QNR|1|1H|C|1734
6QNR|1|1H|G|1735
6QNR|1|1H|U|1736
6QNR|1|1H|A|1737
6QNR|1|1H|A|1738
6QNR|1|1H|C|1739
*
6QNR|1|1H|G|1744
6QNR|1|1H|G|1745
6QNR|1|1H|A|1746
6QNR|1|1H|G|1747
6QNR|1|1H|A|1748
6QNR|1|1H|A|1749
6QNR|1|1H|G|1750

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA