IL_6QNR_299

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6QNR|1|1H|G|1833, 6QNR|1|1H|G|1848, 6QNR|1|1H|U|1852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_299 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0495

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6QNR|1|1H|U|1830
6QNR|1|1H|G|1831
6QNR|1|1H|C|1832
6QNR|1|1H|G|1833
6QNR|1|1H|A|1834
6QNR|1|1H|A|1835
6QNR|1|1H|C|1836
*
6QNR|1|1H|G|1845
6QNR|1|1H|G|1846
6QNR|1|1H|A|1847
6QNR|1|1H|G|1848
6QNR|1|1H|G|1849
6QNR|1|1H|U|1850
6QNR|1|1H|A|1851
6QNR|1|1H|U|1852
6QNR|1|1H|A|1853

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA