IL_6QNR_306

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6QNR|1|1H|A|1961, 6QNR|1|1H|U|1967, 6QNR|1|1H|U|1986

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_306 not in the Motif Atlas

Homologous match to IL_7RQB_077

Geometric discrepancy: 0.0683

The information below is about IL_7RQB_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QNR|1|1H|C|1957
6QNR|1|1H|G|1958
6QNR|1|1H|A|1959
6QNR|1|1H|A|1960
6QNR|1|1H|A|1961
6QNR|1|1H|5MU|1962
6QNR|1|1H|U|1963
6QNR|1|1H|C|1964
6QNR|1|1H|5MC|1965
6QNR|1|1H|U|1966
6QNR|1|1H|U|1967
6QNR|1|1H|G|1968
*
6QNR|1|1H|C|1984
6QNR|1|1H|5MC|1985
6QNR|1|1H|U|1986
6QNR|1|1H|G|1987

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 1K

Transfer RNA; tRNA